Variant report
| Variant | rs6984001 |
|---|---|
| Chromosome Location | chr8:95604669-95604670 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:180)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:95604279..95604876-chr8:95624972..95625755,2 | MCF-7 | breast: | |
| 2 | chr8:95604280..95605218-chr8:95654234..95655141,4 | MCF-7 | breast: | |
| 3 | chr8:95603957..95608238-chr8:95651708..95655027,4 | MCF-7 | breast: | |
| 4 | chr8:95603445..95604962-chr8:95650191..95651732,2 | MCF-7 | breast: | |
| 5 | chr8:95604274..95605200-chr8:95725698..95726286,2 | MCF-7 | breast: | |
| 6 | chr8:95604246..95605617-chr8:95725348..95726635,8 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254283 | TF binding region |
| ENSG00000261437 | Chromatin interaction |
| ENSG00000104413 | Chromatin interaction |
| ENSG00000199701 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs3133614 | 0.80[CEU][hapmap] |
| rs6987063 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs73261380 | 0.96[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73261386 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017301 | chr8:95273503-96248352 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 2 | nsv539680 | chr8:95273503-96248352 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 3 | nsv532338 | chr8:95296118-95971825 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 4 | nsv429928 | chr8:95488800-95672033 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 5 | nsv429929 | chr8:95564533-95676894 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 6 | nsv520435 | chr8:95598598-95608367 | Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 7 | esv3350182 | chr8:95601526-95604924 | Inactive region | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 8 | esv3422133 | chr8:95602201-95604749 | Inactive region | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
