Variant report

Variant	rs6984818
Chromosome Location	chr8:103729448-103729449
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103722346..103725936-chr8:103727118..103730483,4	MCF-7	breast:
2	chr8:103664415..103670172-chr8:103727152..103730542,7	MCF-7	breast:
3	chr8:103728869..103730949-chr8:103820340..103823063,2	MCF-7	breast:
4	chr8:103725029..103726872-chr8:103728215..103730220,2	K562	blood:
5	chr8:103728137..103730648-chr8:103739686..103741368,2	MCF-7	breast:
6	chr8:103729361..103730942-chr8:103748106..103750918,2	MCF-7	breast:
7	chr8:103728701..103730461-chr8:103733855..103737197,3	MCF-7	breast:
8	chr8:103727672..103730639-chr8:103766988..103768842,2	MCF-7	breast:
9	chr8:103729020..103731875-chr8:103736686..103738865,2	K562	blood:
10	chr17:39568250..39571054-chr8:103727034..103729511,2	MCF-7	breast:
11	chr8:103729046..103731484-chr8:103733329..103735923,3	MCF-7	breast:
12	chr8:103728412..103729988-chr8:103738738..103740812,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2053127	1.00[JPT][hapmap]
rs28417860	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28546768	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28583302	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28616140	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35027035	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4476982	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55902502	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6984300	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103713200-103733600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103723600-103733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:103727600-103730200	Enhancers	Placenta	Placenta
4	chr8:103728800-103733600	Weak transcription	Esophagus	oesophagus
5	chr8:103729000-103729800	Weak transcription	Thymus	Thymus
6	chr8:103729000-103730400	Enhancers	K562	blood
7	chr8:103729000-103731400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:103729000-103733200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:103729200-103733600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:103729400-103732000	Weak transcription	HMEC	breast
11	chr8:103729400-103740200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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