Variant report

Variant	rs6986012
Chromosome Location	chr8:20224209-20224210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10101529	1.00[EUR][1000 genomes]
rs10110728	1.00[EUR][1000 genomes]
rs12542181	1.00[EUR][1000 genomes]
rs12546283	1.00[EUR][1000 genomes]
rs12549869	1.00[EUR][1000 genomes]
rs17092668	1.00[EUR][1000 genomes]
rs28368992	1.00[EUR][1000 genomes]
rs28375852	1.00[EUR][1000 genomes]
rs28398795	1.00[EUR][1000 genomes]
rs28475243	1.00[EUR][1000 genomes]
rs28485611	1.00[EUR][1000 genomes]
rs28552383	1.00[EUR][1000 genomes]
rs28661722	1.00[EUR][1000 genomes]
rs28720941	1.00[EUR][1000 genomes]
rs2898498	1.00[EUR][1000 genomes]
rs34062067	1.00[EUR][1000 genomes]
rs57127754	1.00[EUR][1000 genomes]
rs57435297	1.00[EUR][1000 genomes]
rs60073527	1.00[EUR][1000 genomes]
rs7000017	1.00[EUR][1000 genomes]
rs7004907	1.00[EUR][1000 genomes]
rs7009375	1.00[EUR][1000 genomes]
rs73611670	1.00[EUR][1000 genomes]
rs73669753	1.00[EUR][1000 genomes]
rs73669754	1.00[EUR][1000 genomes]
rs73669756	1.00[EUR][1000 genomes]
rs7834224	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20217600-20226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:20219600-20226400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:20219800-20226400	Weak transcription	HSMMtube	muscle
4	chr8:20221800-20226400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:20221800-20226600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:20221800-20226600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:20222000-20226400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:20222200-20226400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:20222400-20226600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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