Variant report

Variant	rs6987004
Chromosome Location	chr8:34524003-34524004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10503965	0.87[AFR][1000 genomes]
rs12543513	0.87[AFR][1000 genomes]
rs12543518	0.87[AFR][1000 genomes]
rs12543568	0.87[AFR][1000 genomes]
rs12545278	0.86[AFR][1000 genomes]
rs12546023	0.87[AFR][1000 genomes]
rs12547489	0.86[AFR][1000 genomes]
rs16882701	0.87[AFR][1000 genomes]
rs16882703	0.87[AFR][1000 genomes]
rs28540657	0.85[AFR][1000 genomes]
rs35008961	0.87[AFR][1000 genomes]
rs4263763	0.88[AFR][1000 genomes]
rs59950658	0.86[AFR][1000 genomes]
rs7005465	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831283	chr8:34501243-34662634	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Pulmonary function decline	22424883	GWAS catalog

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34522600-34524600	Enhancers	HUVEC	blood vessel
2	chr8:34523000-34524400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:34523400-34524400	Weak transcription	Fetal Kidney	kidney
4	chr8:34524000-34524800	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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