Variant report

Variant	rs6988286
Chromosome Location	chr8:119910364-119910365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:119901946..119903477-chr8:119908187..119910521,2	MCF-7	breast:
2	chr8:119897848..119900046-chr8:119910331..119912294,2	MCF-7	breast:
3	chr8:119909629..119911189-chr8:119934739..119937482,2	MCF-7	breast:
4	chr8:119909435..119912198-chr8:119913488..119916244,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11573911	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35553312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119908200-119910400	Enhancers	NHLF	lung
2	chr8:119908200-119910600	Enhancers	Hela-S3	cervix
3	chr8:119908200-119915200	Enhancers	Fetal Intestine Small	intestine
4	chr8:119908400-119910600	Enhancers	HMEC	breast
5	chr8:119908600-119911000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr8:119909000-119912000	Enhancers	Fetal Intestine Large	intestine
7	chr8:119909200-119914400	Weak transcription	Aorta	Aorta
8	chr8:119909200-119916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:119909800-119914400	Weak transcription	HSMM	muscle
10	chr8:119910000-119912600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:119910000-119913200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:119910000-119913800	Weak transcription	Osteobl	bone
13	chr8:119910000-119914000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:119910000-119914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:119910000-119914200	Weak transcription	Pancreas	Pancrea
16	chr8:119910000-119915000	Weak transcription	HUVEC	blood vessel
17	chr8:119910200-119910400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr8:119910200-119910600	Weak transcription	Liver	Liver
19	chr8:119910200-119912600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:119910200-119912600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:119910200-119912800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:119910200-119912800	Weak transcription	NHDF-Ad	bronchial
23	chr8:119910200-119914200	Weak transcription	Stomach Mucosa	stomach
24	chr8:119910200-119914600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:119910200-119914800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:119910200-119914800	Weak transcription	NHEK	skin
27	chr8:119910200-119917200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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