Variant report

Variant	rs6989278
Chromosome Location	chr8:99352380-99352381
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99351310..99353495-chr8:99481497..99483902,2	MCF-7	breast:
2	chr8:99344628..99346433-chr8:99351762..99354586,2	K562	blood:
3	chr8:99178985..99181472-chr8:99351394..99354119,4	MCF-7	breast:
4	chr8:99318271..99319945-chr8:99351260..99353325,2	MCF-7	breast:
5	chr8:99302112..99311881-chr8:99336694..99356691,43	MCF-7	breast:
6	chr8:99249927..99252814-chr8:99350531..99353250,2	MCF-7	breast:
7	chr8:99304023..99311791-chr8:99340525..99354206,27	MCF-7	breast:
8	chr8:99351707..99353474-chr8:99355817..99358709,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11787268	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs4568589	0.81[AMR][1000 genomes]
rs55883753	0.81[AMR][1000 genomes]
rs73701163	0.81[AMR][1000 genomes]
rs73701175	0.81[AMR][1000 genomes]
rs73701179	0.81[AMR][1000 genomes]
rs7826869	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv891217	chr8:99346537-99391285	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99344400-99354200	Enhancers	NHDF-Ad	bronchial
2	chr8:99348200-99354600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:99348600-99355200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:99350800-99352800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99351000-99352800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:99351000-99352800	Weak transcription	Osteobl	bone
7	chr8:99351000-99353000	Weak transcription	HSMM	muscle
8	chr8:99351000-99353000	Weak transcription	HSMMtube	muscle
9	chr8:99351200-99352600	Weak transcription	HMEC	breast
10	chr8:99351200-99352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:99351400-99352800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:99351400-99352800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:99351600-99354600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:99351800-99352800	Weak transcription	NHLF	lung
15	chr8:99352000-99352400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:99352000-99353200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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