Variant report

Variant	rs6989795
Chromosome Location	chr8:110086377-110086378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11995096	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16879035	1.00[CEU][hapmap];0.92[MEX][hapmap];0.81[EUR][1000 genomes]
rs4129683	0.90[CEU][hapmap];0.92[MEX][hapmap]
rs61335240	0.81[EUR][1000 genomes]
rs6469232	0.80[EUR][1000 genomes]
rs73309523	0.81[EUR][1000 genomes]
rs7829028	0.90[CEU][hapmap];0.84[MEX][hapmap]
rs7839820	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022273	chr8:110026712-110146600	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539715	chr8:110026712-110146600	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891271	chr8:110054427-110101683	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110079200-110089800	Weak transcription	Left Ventricle	heart
2	chr8:110083800-110086400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:110084000-110086400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:110086200-110086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:110086200-110088000	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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