Variant report

Variant	rs6990360
Chromosome Location	chr8:115954072-115954073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10505238	0.83[ASN][1000 genomes]
rs10505240	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10505241	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955736	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12334988	0.81[ASN][1000 genomes]
rs1370080	0.83[ASN][1000 genomes]
rs16886632	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16886637	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16886646	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16886689	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16886694	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16886718	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16886729	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16886749	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16886751	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16886753	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16886754	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17667338	0.83[ASN][1000 genomes]
rs17729017	0.83[ASN][1000 genomes]
rs17729840	0.83[ASN][1000 genomes]
rs4379477	0.89[ASN][1000 genomes]
rs4379479	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4515577	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55966203	0.89[ASN][1000 genomes]
rs56667189	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59268685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62511963	0.83[ASN][1000 genomes]
rs62514166	0.83[ASN][1000 genomes]
rs62514182	0.83[ASN][1000 genomes]
rs62514219	0.83[ASN][1000 genomes]
rs6469562	0.81[ASN][1000 genomes]
rs6980860	0.83[ASN][1000 genomes]
rs7005826	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7006126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7013533	0.83[ASN][1000 genomes]
rs7016452	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7833267	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7835335	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7836967	0.89[ASN][1000 genomes]
rs7841613	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643095	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9643096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643097	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018280	chr8:115307838-116189192	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv539726	chr8:115307838-116189192	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891372	chr8:115351857-116037119	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891377	chr8:115395451-116110725	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv891395	chr8:115642536-116222842	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2754852	chr8:115803396-115958801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv891397	chr8:115810385-116129344	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3368267	chr8:115952476-115955974	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:115947800-115954200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:115952800-115954200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:115952800-115954200	Enhancers	Hela-S3	cervix
4	chr8:115953000-115954200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:115953800-115955800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:115953800-115956000	Weak transcription	NHDF-Ad	bronchial
7	chr8:115953800-115965200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:115954000-115956200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links