Variant report

Variant	rs6991989
Chromosome Location	chr8:65517169-65517170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16931340	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931343	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931365	1.00[MEX][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap]
rs16931369	1.00[MEX][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap]
rs6994260	1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73237707	1.00[AMR][1000 genomes]
rs73237717	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv611449	chr8:65511032-65543401	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65500600-65526800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:65503600-65538400	Weak transcription	Fetal Kidney	kidney
4	chr8:65505800-65521400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:65507400-65526400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:65507600-65520200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:65507800-65527200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:65510000-65525400	Weak transcription	Esophagus	oesophagus
9	chr8:65510400-65527400	Weak transcription	Adipose Nuclei	Adipose
10	chr8:65512200-65517400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:65513200-65519000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:65515000-65517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:65515200-65517400	Weak transcription	Ovary	ovary
14	chr8:65515200-65517600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:65515600-65528200	Weak transcription	Brain Substantia Nigra	brain
16	chr8:65515800-65517200	Strong transcription	Fetal Lung	lung
17	chr8:65516200-65517600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:65516400-65517800	Strong transcription	Liver	Liver
19	chr8:65516600-65517400	Strong transcription	Brain Anterior Caudate	brain
20	chr8:65516600-65521800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr8:65516600-65522000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:65516800-65517400	Strong transcription	Fetal Muscle Leg	muscle

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