Variant report

Variant	rs6995690
Chromosome Location	chr8:59441245-59441246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2326078	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634529	0.82[AMR][1000 genomes]
rs2634532	1.00[AMR][1000 genomes]
rs2634533	0.94[AMR][1000 genomes]
rs2680896	0.86[AMR][1000 genomes]
rs2680898	1.00[AMR][1000 genomes]
rs2680900	1.00[AMR][1000 genomes]
rs2680903	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2680904	0.84[AMR][1000 genomes]
rs2969915	0.86[AMR][1000 genomes]
rs4307329	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv6212	chr8:59435671-59451750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59435400-59442400	Weak transcription	Gastric	stomach
2	chr8:59439200-59441400	Enhancers	Hela-S3	cervix
3	chr8:59439600-59442000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:59439800-59442000	Weak transcription	Aorta	Aorta
5	chr8:59439800-59442000	Weak transcription	Left Ventricle	heart
6	chr8:59440400-59441800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:59440400-59465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:59440800-59442200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:59441200-59441600	Weak transcription	Fetal Heart	heart
10	chr8:59441200-59442800	Enhancers	Right Atrium	heart
11	chr8:59441200-59443000	Enhancers	Placenta	Placenta
12	chr8:59441200-59443400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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