Variant report

Variant	rs6995807
Chromosome Location	chr8:34718036-34718037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11995406	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580167	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580176	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580186	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34717200-34718600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr8:34717400-34718600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:34717600-34718400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:34718000-34718400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr8:34718000-34718600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:34718000-34718800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:34718000-34719400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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