Variant report

Variant	rs6998837
Chromosome Location	chr8:9000681-9000682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10087078	1.00[JPT][hapmap]
rs17155163	1.00[CEU][hapmap]
rs2898209	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55642015	0.84[EUR][1000 genomes]
rs6982039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512435	1.00[AMR][1000 genomes]
rs7838663	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1022328	chr8:8954003-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv610206	chr8:8961017-9162048	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1026279	chr8:8982622-9030279	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	n/a
8	nsv949434	chr8:8993551-9318404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8993600-9005400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:8993800-9007400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:8994200-9000800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr8:8994200-9005600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:8994200-9007200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:8994200-9007200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:8994200-9007200	Weak transcription	Fetal Brain Male	brain
8	chr8:8994400-9001000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:8994400-9005200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:8994400-9005200	Weak transcription	Small Intestine	intestine
11	chr8:8994800-9001000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:8994800-9001000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr8:8994800-9001800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:8995000-9000800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr8:8995200-9000800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:8995200-9000800	Strong transcription	Fetal Muscle Leg	muscle
17	chr8:8995200-9004800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:8995400-9001000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:8996200-9000800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:8996200-9001800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:8996400-9000800	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr8:8997000-9004800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:8997200-9000800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr8:8997400-9000800	Genic enhancers	Liver	Liver
25	chr8:8998000-9004200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:8998200-9001600	Strong transcription	Fetal Intestine Large	intestine
27	chr8:8998400-9000800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:8998400-9000800	Strong transcription	Adipose Nuclei	Adipose
29	chr8:8998400-9000800	Strong transcription	Placenta	Placenta
30	chr8:8998400-9002000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:8998400-9005600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr8:8998600-9003400	Weak transcription	Psoas Muscle	Psoas
33	chr8:8998600-9003800	Strong transcription	Fetal Intestine Small	intestine
34	chr8:8998600-9007200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:8998800-9003400	Weak transcription	Right Atrium	heart
36	chr8:8998800-9004600	Weak transcription	Stomach Mucosa	stomach
37	chr8:8998800-9005000	Weak transcription	Esophagus	oesophagus
38	chr8:8998800-9005000	Weak transcription	A549	lung
39	chr8:8998800-9005400	Weak transcription	NHEK	skin
40	chr8:8998800-9007000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr8:8998800-9007200	Weak transcription	Fetal Kidney	kidney
42	chr8:8998800-9007200	Weak transcription	Fetal Thymus	thymus
43	chr8:8999000-9000800	Enhancers	Fetal Heart	heart
44	chr8:8999000-9003800	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:8999000-9004800	Weak transcription	K562	blood
46	chr8:8999000-9005200	Weak transcription	GM12878-XiMat	blood
47	chr8:8999000-9005400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:8999000-9007200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr8:8999000-9007200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr8:8999200-9003200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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