Variant report

Variant	rs6999552
Chromosome Location	chr8:129958176-129958177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16893221	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73708258	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449597	chr8:129957924-129958214	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129937400-129958800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:129951600-129959400	Weak transcription	Psoas Muscle	Psoas
3	chr8:129951800-129958200	Weak transcription	Dnd41	blood
4	chr8:129956400-129960000	Enhancers	Fetal Muscle Leg	muscle
5	chr8:129956800-129958200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:129957200-129960200	Enhancers	HSMM	muscle
7	chr8:129957800-129960600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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