Variant report

Variant	rs7001402
Chromosome Location	chr8:20350724-20350725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10100458	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10100567	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11204116	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204117	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11779595	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543622	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675436	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249119	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255104	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261825	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13272433	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281858	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13282673	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1383250	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480347	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480349	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480350	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092514	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17092620	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092624	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28368993	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404078	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28612068	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2898509	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35114366	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35145241	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4406408	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4921720	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6989163	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014186	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7812583	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9644569	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9785133	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv916454	chr8:20342959-20531705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20348600-20354600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr8:20348800-20353400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:20349000-20353200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:20349200-20352600	Enhancers	Thymus	Thymus
5	chr8:20349400-20350800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:20349400-20353000	Enhancers	Fetal Thymus	thymus
7	chr8:20349800-20351800	Enhancers	Dnd41	blood
8	chr8:20349800-20353400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:20350000-20351000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:20350000-20351400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:20350000-20352600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr8:20350200-20350800	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr8:20350200-20351000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:20350200-20351200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:20350200-20351800	Enhancers	Primary hematopoietic stem cells	blood
16	chr8:20350400-20350800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr8:20350400-20350800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr8:20350400-20351200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:20350400-20352000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:20350400-20352400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:20350400-20352600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:20350600-20350800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr8:20350600-20350800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr8:20350600-20351200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:20350600-20352400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr8:20350600-20353800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr8:20350600-20354200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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