Variant report

Variant	rs700162
Chromosome Location	chr5:35963507-35963508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35963337..35964158-chr5:36041173..36041858,3	MCF-7	breast:
2	chr5:35963280..35963994-chr5:36090136..36090832,3	MCF-7	breast:
3	chr22:18640048..18640570-chr5:35963224..35964074,2	MCF-7	breast:
4	chr5:35963141..35964337-chr5:36089811..36090751,6	MCF-7	breast:
5	chr5:35963329..35964059-chr5:36305604..36306431,3	K562	blood:
6	chr5:35963211..35964171-chr5:36041187..36042498,12	MCF-7	breast:
7	chr5:35963146..35963981-chr5:36073419..36074223,2	MCF-7	breast:
8	chr12:58298839..58299678-chr5:35963312..35964081,2	MCF-7	breast:
9	chr5:35963275..35963878-chr5:36039562..36040175,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs700163	0.90[JPT][hapmap]
rs700164	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35955000-35963600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr5:35957400-35963600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:35959000-35969200	Weak transcription	Psoas Muscle	Psoas
4	chr5:35960400-35963800	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr5:35960400-35966400	Strong transcription	Fetal Intestine Large	intestine
6	chr5:35961200-35963600	Weak transcription	Liver	Liver
7	chr5:35962800-35963800	ZNF genes & repeats	Fetal Muscle Leg	muscle
8	chr5:35963200-35964200	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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