Variant report

Variant	rs7003275
Chromosome Location	chr8:59010557-59010558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10113596	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10551162	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13271022	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017063	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34101827	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471680	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471684	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004271	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
2	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
3	chr8:58992200-59010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59000000-59010800	Weak transcription	Fetal Lung	lung
5	chr8:59000200-59010600	Weak transcription	Right Atrium	heart
6	chr8:59004400-59010600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:59004600-59011000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:59004800-59012400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:59005000-59010800	Weak transcription	Fetal Brain Male	brain
10	chr8:59008200-59011000	Enhancers	Liver	Liver
11	chr8:59008800-59011600	Enhancers	HepG2	liver
12	chr8:59009400-59020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:59010000-59010800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:59010200-59010800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:59010200-59010800	Enhancers	Adipose Nuclei	Adipose
16	chr8:59010200-59011000	Enhancers	NHDF-Ad	bronchial
17	chr8:59010200-59011400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:59010400-59010600	Enhancers	Fetal Stomach	stomach
19	chr8:59010400-59010800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:59010400-59010800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:59010400-59010800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr8:59010400-59010800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:59010400-59010800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:59010400-59010800	Enhancers	Left Ventricle	heart
25	chr8:59010400-59010800	Weak transcription	HSMM	muscle
26	chr8:59010400-59011000	Enhancers	Primary B cells from peripheral blood	blood
27	chr8:59010400-59011000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr8:59010400-59011000	Enhancers	Fetal Muscle Trunk	muscle
29	chr8:59010400-59011000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr8:59010400-59011000	Enhancers	Spleen	Spleen
31	chr8:59010400-59011400	Enhancers	Fetal Brain Female	brain
32	chr8:59010400-59011400	Enhancers	Placenta	Placenta
33	chr8:59010400-59011400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr8:59010400-59011600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:59010400-59011600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:59010400-59011600	Enhancers	Fetal Muscle Leg	muscle
37	chr8:59010400-59011600	Enhancers	Lung	lung
38	chr8:59010400-59011600	Enhancers	Right Ventricle	heart

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