Variant report

Variant	rs7004981
Chromosome Location	chr8:99075134-99075135
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11985115	0.90[AMR][1000 genomes]
rs11987110	0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11994319	1.00[AMR][1000 genomes]
rs11994595	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994638	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs11995769	0.81[AMR][1000 genomes]
rs11996042	0.81[YRI][hapmap]
rs11996661	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16896518	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs7012944	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv465745	chr8:99061992-99116201	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv611805	chr8:99061992-99116201	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99059400-99076200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:99064800-99076400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:99069200-99076200	Weak transcription	Ovary	ovary
4	chr8:99071400-99076200	Weak transcription	A549	lung
5	chr8:99072200-99076400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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