Variant report

Variant	rs7005151
Chromosome Location	chr8:2097055-2097056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10110527	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11985249	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1550452	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4258028	0.94[ASN][1000 genomes]
rs4529490	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6558610	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66461621	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71518194	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314451	0.89[ASN][1000 genomes]
rs9314452	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9314453	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7005151	C8orf42	cis	cerebellum	SCAN
rs7005151	ZNF71	trans	multi-tissue	Pritchard
rs7005151	MYOM2	Cis_1M	lymphoblastoid	RTeQTL
rs7005151	MYOM2	cis	multi-tissue	Pritchard
rs7005151	MYOM2	cis	lymphoblastoid	seeQTL
rs7005151	RPL23AP53	cis	cerebellum	SCAN
rs7005151	MYOM2	cis	Whole Blood	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
2	chr8:2076400-2097800	Strong transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:2093000-2103400	Weak transcription	Pancreas	Pancrea
4	chr8:2093000-2107200	Weak transcription	Gastric	stomach
5	chr8:2093200-2098400	Weak transcription	Fetal Stomach	stomach
6	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
7	chr8:2095400-2100800	Weak transcription	Fetal Thymus	thymus
8	chr8:2095400-2103200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr8:2096200-2097600	Strong transcription	Fetal Muscle Leg	muscle
10	chr8:2096400-2101600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:2096800-2101000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:2096800-2102800	Weak transcription	Left Ventricle	heart
13	chr8:2097000-2099000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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