Variant report

Variant	rs7005602
Chromosome Location	chr8:58600994-58600995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13252002	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13254656	0.91[ASN][1000 genomes]
rs13261566	0.82[ASN][1000 genomes]
rs13266423	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1349442	0.81[ASN][1000 genomes]
rs16922453	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4266637	0.90[ASN][1000 genomes]
rs4538859	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs976900	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7005602	TMEM68	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58600200-58601400	Weak transcription	Fetal Stomach	stomach
2	chr8:58600600-58601800	Weak transcription	Aorta	Aorta
3	chr8:58600800-58601000	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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