Variant report

Variant	rs7005617
Chromosome Location	chr8:62416074-62416075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13282653	1.00[EUR][1000 genomes]
rs2640227	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2640228	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs2640229	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2640233	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2640234	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2640236	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2640238	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2640240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237044	1.00[MEX][hapmap]
rs4483150	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4620280	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs4625030	1.00[MEX][hapmap]
rs4737588	1.00[MEX][hapmap]
rs4738904	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs6471957	1.00[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6980640	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7010694	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7012700	0.89[EUR][1000 genomes]
rs7013514	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs7017540	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs938688	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv521898	chr8:62364663-62419120	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62408600-62427800	Weak transcription	Fetal Intestine Large	intestine
2	chr8:62408600-62430800	Weak transcription	Fetal Brain Male	brain
3	chr8:62408800-62427600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:62408800-62432000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:62409000-62427800	Weak transcription	HMEC	breast
6	chr8:62409200-62426000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:62409400-62421200	Weak transcription	Brain Anterior Caudate	brain
8	chr8:62410400-62417600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:62410600-62420400	Weak transcription	Gastric	stomach
10	chr8:62411000-62505800	Weak transcription	Brain Angular Gyrus	brain
11	chr8:62411200-62417600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:62411200-62493800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:62411400-62422200	Weak transcription	Spleen	Spleen
14	chr8:62411600-62429800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:62412000-62418800	Strong transcription	NHDF-Ad	bronchial
16	chr8:62412000-62426000	Strong transcription	Adipose Nuclei	Adipose
17	chr8:62412000-62455600	Strong transcription	A549	lung
18	chr8:62412200-62420400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:62412200-62420400	Weak transcription	Lung	lung
20	chr8:62412400-62416400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr8:62412400-62428000	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:62412600-62417000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:62412600-62418200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:62412600-62419200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:62412600-62425800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:62412600-62428200	Weak transcription	HepG2	liver
27	chr8:62412800-62417800	Strong transcription	HSMM	muscle
28	chr8:62412800-62419600	Strong transcription	NH-A	brain
29	chr8:62412800-62438800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:62413400-62428200	Weak transcription	Fetal Muscle Leg	muscle
31	chr8:62413400-62436000	Weak transcription	Small Intestine	intestine
32	chr8:62413600-62416200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:62413800-62416200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:62413800-62417600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:62413800-62429600	Weak transcription	HSMMtube	muscle
36	chr8:62414000-62416400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr8:62414000-62420400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:62414000-62421800	Strong transcription	Osteobl	bone
39	chr8:62414200-62418000	Weak transcription	Ovary	ovary
40	chr8:62414200-62428000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr8:62414200-62428200	Weak transcription	Brain Substantia Nigra	brain
42	chr8:62414200-62455400	Weak transcription	Fetal Lung	lung
43	chr8:62414400-62419200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr8:62414400-62419600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:62414400-62420400	Weak transcription	Fetal Stomach	stomach
46	chr8:62414400-62420600	Weak transcription	Brain Germinal Matrix	brain
47	chr8:62414400-62424400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:62414400-62429800	Weak transcription	Colonic Mucosa	Colon
49	chr8:62414600-62420600	Strong transcription	NHLF	lung
50	chr8:62414600-62424600	Weak transcription	K562	blood

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