Variant report
| Variant | rs7005808 |
|---|---|
| Chromosome Location | chr8:34532101-34532102 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10110457 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11995347 | 0.81[AMR][1000 genomes] |
| rs13260157 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13261872 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13262347 | 0.81[AMR][1000 genomes] |
| rs13268340 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1403377 | 0.81[AMR][1000 genomes] |
| rs1522849 | 0.81[AMR][1000 genomes] |
| rs1522850 | 0.81[AMR][1000 genomes] |
| rs1608233 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1916172 | 0.81[AMR][1000 genomes] |
| rs1916176 | 0.81[AMR][1000 genomes] |
| rs1949719 | 0.81[AMR][1000 genomes] |
| rs1949720 | 0.81[AMR][1000 genomes] |
| rs2685591 | 0.81[AMR][1000 genomes] |
| rs2685599 | 0.81[AMR][1000 genomes] |
| rs2685607 | 0.81[AMR][1000 genomes] |
| rs2687554 | 0.81[AMR][1000 genomes] |
| rs2687556 | 0.81[AMR][1000 genomes] |
| rs4556086 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6468286 | 0.81[AMR][1000 genomes] |
| rs6994824 | 0.81[AMR][1000 genomes] |
| rs7816776 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7822537 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7837402 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7843303 | 0.81[AMR][1000 genomes] |
| rs7845916 | 0.81[AMR][1000 genomes] |
| rs952902 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831283 | chr8:34501243-34662634 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7005808 | DDHD2 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:34531600-34533000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
