Variant report

Variant	rs7005864
Chromosome Location	chr8:122487125-122487126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73334313	0.94[AFR][1000 genomes]
rs73334316	0.94[AFR][1000 genomes]
rs73334317	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122468600-122487600	Weak transcription	Fetal Kidney	kidney
2	chr8:122483400-122487600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:122483600-122487200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:122483800-122487600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:122484000-122487400	Weak transcription	Osteobl	bone
6	chr8:122484200-122487200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:122484600-122487400	Weak transcription	HSMMtube	muscle
8	chr8:122484800-122487600	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:122486200-122488600	Enhancers	NHDF-Ad	bronchial
10	chr8:122486400-122487200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:122486400-122488000	Enhancers	NHLF	lung
12	chr8:122486600-122487600	Weak transcription	Fetal Lung	lung
13	chr8:122486600-122487600	Weak transcription	Fetal Stomach	stomach
14	chr8:122486800-122487200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:122487000-122487400	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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