Variant report

Variant	rs7006037
Chromosome Location	chr8:63010961-63010962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11776176	0.87[AFR][1000 genomes]
rs11996717	0.85[AFR][1000 genomes]
rs11998202	0.90[AFR][1000 genomes]
rs12543953	0.90[AFR][1000 genomes]
rs12546000	0.85[AFR][1000 genomes]
rs13275771	0.85[AFR][1000 genomes]
rs13279917	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1431925	0.85[AFR][1000 genomes]
rs4738934	0.90[AFR][1000 genomes]
rs4738936	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988855	0.87[AFR][1000 genomes]
rs6992967	0.85[AFR][1000 genomes]
rs6996844	0.90[AFR][1000 genomes]
rs7815312	0.90[AFR][1000 genomes]
rs7832142	0.82[AFR][1000 genomes]
rs8180921	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9650147	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890954	chr8:62919691-63023132	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1032321	chr8:62954064-63026567	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63009600-63013600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links