Variant report

Variant	rs7006832
Chromosome Location	chr8:125744137-125744138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11986350	1.00[EUR][1000 genomes]
rs16900004	1.00[EUR][1000 genomes]
rs57412581	1.00[EUR][1000 genomes]
rs60882869	1.00[EUR][1000 genomes]
rs6990550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999319	1.00[EUR][1000 genomes]
rs7001026	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7008134	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73347655	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv612147	chr8:125733120-125751065	Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125741200-125746800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:125741400-125747000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:125741600-125746800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:125741600-125748400	Weak transcription	Psoas Muscle	Psoas
5	chr8:125742400-125745800	Weak transcription	Spleen	Spleen
6	chr8:125742600-125746800	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:125743000-125744800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:125743400-125744400	Enhancers	K562	blood
9	chr8:125743600-125744600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:125743600-125744800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:125743600-125744800	Enhancers	Placenta	Placenta
12	chr8:125744000-125744200	Enhancers	Brain Germinal Matrix	brain
13	chr8:125744000-125744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links