Variant report

Variant	rs7007225
Chromosome Location	chr8:58919701-58919702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58918597..58920441-chr8:58959526..58962470,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1876378	1.00[AMR][1000 genomes]
rs56071871	1.00[AMR][1000 genomes]
rs6471674	1.00[AMR][1000 genomes]
rs6471676	1.00[AMR][1000 genomes]
rs6987309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6994685	1.00[AMR][1000 genomes]
rs7014606	1.00[AMR][1000 genomes]
rs7828094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828484	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7836163	1.00[AMR][1000 genomes]
rs7841736	1.00[AMR][1000 genomes]
rs7842095	1.00[AMR][1000 genomes]
rs7842189	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908400-58920000	Weak transcription	Spleen	Spleen
2	chr8:58908400-58926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:58908400-58928800	Weak transcription	Esophagus	oesophagus
4	chr8:58908400-58929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
7	chr8:58909400-58920000	Weak transcription	Stomach Mucosa	stomach
8	chr8:58909400-58928800	Weak transcription	Fetal Intestine Large	intestine
9	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:58909800-58919800	Weak transcription	Right Ventricle	heart
11	chr8:58909800-58921600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:58913400-58929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:58914200-58929000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:58914600-58924600	Strong transcription	HSMM	muscle
15	chr8:58916000-58919800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr8:58916000-58924200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:58916200-58924000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:58916200-58926400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:58916400-58926600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:58916400-58929000	Weak transcription	NHDF-Ad	bronchial
21	chr8:58916400-58929200	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:58916400-58934600	Weak transcription	Brain Anterior Caudate	brain
23	chr8:58916600-58919800	Weak transcription	Fetal Heart	heart
24	chr8:58916600-58926400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:58916600-58926400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:58916600-58929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:58916600-58929200	Weak transcription	Osteobl	bone
28	chr8:58916800-58926000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:58916800-58928800	Weak transcription	Psoas Muscle	Psoas
30	chr8:58916800-58929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:58917000-58921800	Strong transcription	HSMMtube	muscle
32	chr8:58917000-58925000	Strong transcription	Fetal Muscle Trunk	muscle
33	chr8:58917000-58926000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:58917000-58926400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:58917000-58927200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:58917400-58925400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:58917600-58919800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:58917600-58924800	Strong transcription	Fetal Lung	lung
39	chr8:58917600-58925400	Strong transcription	Fetal Muscle Leg	muscle
40	chr8:58917600-58928000	Weak transcription	Fetal Intestine Small	intestine
41	chr8:58917800-58923200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:58918000-58922000	Strong transcription	Brain Germinal Matrix	brain
43	chr8:58918200-58920400	Strong transcription	Fetal Brain Female	brain
44	chr8:58918400-58922600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:58918400-58926400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr8:58918400-58927000	Strong transcription	Fetal Stomach	stomach
47	chr8:58918800-58924400	Strong transcription	Liver	Liver
48	chr8:58918800-58926400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:58919000-58922000	Strong transcription	Colon Smooth Muscle	Colon
50	chr8:58919200-58920200	Strong transcription	Aorta	Aorta

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