Variant report

Variant	rs7007297
Chromosome Location	chr8:52577588-52577589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10091454	0.84[EUR][1000 genomes]
rs10106091	0.82[EUR][1000 genomes]
rs10109862	0.81[EUR][1000 genomes]
rs10958291	0.87[ASN][1000 genomes]
rs10958293	0.92[ASN][1000 genomes]
rs10958294	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10958296	0.85[EUR][1000 genomes]
rs11775179	0.81[EUR][1000 genomes]
rs11781376	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782339	0.91[ASN][1000 genomes]
rs12548130	0.92[ASN][1000 genomes]
rs12548147	0.82[EUR][1000 genomes]
rs12677123	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13251959	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13265125	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13268396	0.89[EUR][1000 genomes]
rs13268711	0.90[EUR][1000 genomes]
rs13270001	0.82[EUR][1000 genomes]
rs13274101	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13277004	0.83[EUR][1000 genomes]
rs13279418	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16916673	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16916741	0.83[EUR][1000 genomes]
rs16916756	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28492012	0.85[ASN][1000 genomes]
rs28512421	0.84[EUR][1000 genomes]
rs28616568	0.84[EUR][1000 genomes]
rs2976209	0.81[EUR][1000 genomes]
rs34228216	0.84[EUR][1000 genomes]
rs34276635	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34342438	0.84[EUR][1000 genomes]
rs35153909	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35195931	0.84[EUR][1000 genomes]
rs35365537	0.84[EUR][1000 genomes]
rs36052716	0.82[EUR][1000 genomes]
rs36070314	0.85[ASN][1000 genomes]
rs36075262	0.82[EUR][1000 genomes]
rs4242470	0.82[EUR][1000 genomes]
rs4275221	0.90[EUR][1000 genomes]
rs4291264	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4400372	0.85[EUR][1000 genomes]
rs4469447	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873199	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873568	0.92[ASN][1000 genomes]
rs4873572	0.84[EUR][1000 genomes]
rs4873573	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873575	0.84[EUR][1000 genomes]
rs55701628	0.84[EUR][1000 genomes]
rs6981117	0.92[ASN][1000 genomes]
rs6981260	0.85[EUR][1000 genomes]
rs6981313	0.92[ASN][1000 genomes]
rs6986571	0.85[EUR][1000 genomes]
rs6986605	0.85[EUR][1000 genomes]
rs6987346	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6995555	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999693	0.85[EUR][1000 genomes]
rs7000785	0.92[ASN][1000 genomes]
rs7007671	0.83[EUR][1000 genomes]
rs7011666	0.84[EUR][1000 genomes]
rs7823666	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7836565	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7845169	0.89[ASN][1000 genomes]
rs9643785	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643788	0.81[EUR][1000 genomes]
rs9650178	0.92[ASN][1000 genomes]
rs9650303	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv831313	chr8:52458835-52638968	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52566400-52580800	Weak transcription	Aorta	Aorta
2	chr8:52575800-52579800	Weak transcription	Fetal Lung	lung
3	chr8:52576200-52578600	Weak transcription	Fetal Heart	heart
4	chr8:52576600-52578200	Enhancers	Fetal Muscle Leg	muscle
5	chr8:52577000-52577800	Enhancers	Right Ventricle	heart
6	chr8:52577000-52578000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:52577000-52578000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:52577200-52577800	Enhancers	Left Ventricle	heart
9	chr8:52577200-52577800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr8:52577200-52578000	Enhancers	Fetal Muscle Trunk	muscle
11	chr8:52577400-52577800	Enhancers	Lung	lung
12	chr8:52577400-52577800	Enhancers	Psoas Muscle	Psoas
13	chr8:52577400-52577800	Enhancers	Right Atrium	heart
14	chr8:52577400-52578000	Enhancers	Fetal Brain Male	brain
15	chr8:52577400-52578400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links