Variant report

Variant	rs7008032
Chromosome Location	chr8:86042567-86042568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:86041361..86043204-chr8:86048252..86049988,2	MCF-7	breast:
2	chr8:86041424..86043525-chr8:86089868..86091412,2	MCF-7	breast:
3	chr8:86018609..86020657-chr8:86041368..86044315,2	K562	blood:

Variant related genes	Relation type
ENSG00000133739	Chromatin interaction
ENSG00000254208	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10088120	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10091577	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10091710	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10100442	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12549421	0.86[ASN][1000 genomes]
rs12926	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13249364	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13269031	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13269739	0.88[ASN][1000 genomes]
rs2403088	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28621707	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2896454	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34103685	0.92[ASN][1000 genomes]
rs34527380	0.87[ASN][1000 genomes]
rs3779899	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4150859	0.86[ASN][1000 genomes]
rs4150862	0.83[EUR][1000 genomes]
rs4150865	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150867	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4150868	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4150869	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4150884	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4740043	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62527168	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62527173	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6605609	0.85[EUR][1000 genomes]
rs6986704	0.86[EUR][1000 genomes]
rs7004765	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7010228	0.87[ASN][1000 genomes]
rs7015758	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7818090	0.81[EUR][1000 genomes]
rs7823218	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7829050	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7842013	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv1797206	chr8:86023237-86060072	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	esv1800945	chr8:86030101-86060072	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7008032	LRRCC1	cis	Artery Tibial	GTEx
rs7008032	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL
rs7008032	LRRCC1	cis	Esophagus Mucosa	GTEx
rs7008032	C8orf59	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86020000-86057400	Weak transcription	Small Intestine	intestine
2	chr8:86020400-86043800	Weak transcription	NH-A	brain
3	chr8:86020400-86044400	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:86020400-86048400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:86020400-86048400	Weak transcription	Fetal Stomach	stomach
6	chr8:86020400-86049000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:86020400-86054800	Weak transcription	Lung	lung
8	chr8:86020400-86055400	Weak transcription	Fetal Kidney	kidney
9	chr8:86020400-86055400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:86020400-86056400	Weak transcription	Gastric	stomach
11	chr8:86020400-86057400	Weak transcription	Aorta	Aorta
12	chr8:86020400-86062600	Weak transcription	Pancreas	Pancrea
13	chr8:86020600-86044200	Weak transcription	Primary T cells from cord blood	blood
14	chr8:86020600-86045800	Weak transcription	Thymus	Thymus
15	chr8:86020600-86048800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr8:86020600-86049000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr8:86020600-86049200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:86020600-86052400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr8:86020600-86054600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:86020600-86058800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:86020800-86050600	Weak transcription	Brain Angular Gyrus	brain
22	chr8:86021000-86046000	Weak transcription	Colon Smooth Muscle	Colon
23	chr8:86021000-86049800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:86021200-86053600	Weak transcription	Brain Substantia Nigra	brain
25	chr8:86021200-86058800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr8:86021200-86059600	Weak transcription	Fetal Brain Male	brain
27	chr8:86021400-86058400	Weak transcription	Brain Germinal Matrix	brain
28	chr8:86021600-86049800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr8:86021800-86045200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:86025200-86057400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr8:86028400-86059000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:86028600-86056400	Weak transcription	Ovary	ovary
33	chr8:86032400-86045800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:86032600-86050400	Weak transcription	HMEC	breast
35	chr8:86032800-86057400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:86033000-86059800	Weak transcription	Fetal Thymus	thymus
37	chr8:86033600-86046000	Weak transcription	Colonic Mucosa	Colon
38	chr8:86033600-86049000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:86034600-86051200	Weak transcription	Liver	Liver
40	chr8:86035200-86043600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr8:86035200-86049000	Weak transcription	GM12878-XiMat	blood
42	chr8:86035200-86055600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:86035400-86045600	Weak transcription	Fetal Lung	lung
44	chr8:86036200-86049400	Weak transcription	HSMM	muscle
45	chr8:86036600-86050600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr8:86036800-86050400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr8:86037000-86061200	Weak transcription	Brain Anterior Caudate	brain
48	chr8:86037400-86056000	Weak transcription	Right Ventricle	heart
49	chr8:86037600-86046400	Strong transcription	Dnd41	blood
50	chr8:86038000-86057200	Weak transcription	Brain Inferior Temporal Lobe	brain

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