Variant report

Variant	rs7008075
Chromosome Location	chr8:68352280-68352281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10081477	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10081497	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10081557	1.00[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12681728	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12682102	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1503367	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs1847291	0.83[ASN][1000 genomes]
rs28788855	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6472299	0.94[CEU][hapmap];0.81[MEX][hapmap]
rs6472304	0.80[ASN][1000 genomes]
rs66826176	0.89[ASN][1000 genomes]
rs7002216	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7821000	1.00[CEU][hapmap]
rs7840914	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs7841236	1.00[CEU][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7008075	CSPP1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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