Variant report

Variant	rs7008770
Chromosome Location	chr8:39803904-39803905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:39803551-39803957	K562	blood:	n/a	n/a
2	RCOR1	chr8:39803496-39803985	K562	blood:	n/a	n/a
3	JUND	chr8:39803447-39803976	K562	blood:	n/a	n/a
4	MAZ	chr8:39803505-39803946	K562	blood:	n/a	n/a

Variant related genes	Relation type
IDO2	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10089533	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10099498	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10104314	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216703	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958575	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11783682	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2001211	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2007028	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052378	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2340951	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2543043	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2543045	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2543048	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2543052	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2543083	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2543084	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2543085	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2729457	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2729461	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2729463	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2729486	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2729487	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2729489	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2729491	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28666749	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41324645	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66694577	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983467	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6990252	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72643908	0.81[EUR][1000 genomes]
rs7820690	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7008770	TM2D2	cis	Muscle Skeletal	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:39796600-39806200	Weak transcription	Small Intestine	intestine
3	chr8:39797800-39805800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:39797800-39808400	Weak transcription	Fetal Lung	lung
5	chr8:39797800-39808800	Weak transcription	Left Ventricle	heart
6	chr8:39798000-39805600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:39798200-39805600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:39798800-39805400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:39801200-39805800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:39801600-39804400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:39801600-39805400	Weak transcription	Primary B cells from cord blood	blood
12	chr8:39801800-39805400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:39801800-39805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:39801800-39805600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:39802000-39805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:39802800-39808800	Weak transcription	Lung	lung
17	chr8:39803000-39805000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:39803400-39805000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:39803400-39805600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:39803400-39809200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:39803600-39805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:39803800-39804200	Weak transcription	K562	blood

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