Variant report

Variant	rs700999
Chromosome Location	chr9:98433192-98433193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:41398401..41400225-chr9:98431711..98433211,2	MCF-7	breast:
2	chr17:41380435..41383382-chr9:98431711..98434691,2	K562	blood:
3	chr17:41464316..41464827-chr9:98433191..98433691,2	HCT-116	colon:
4	chr11:62607642..62609218-chr9:98433191..98434711,3	MCF-7	breast:
5	chr17:41465183..41465862-chr9:98433191..98433691,2	HCT-116	colon:
6	chr17:41398364..41402158-chr9:98431691..98434711,6	K562	blood:
7	chr10:103124109..103124632-chr9:98433191..98433711,2	HCT-116	colon:
8	chr3:73158468..73160028-chr9:98433191..98434711,2	K562	blood:
9	chr17:41398364..41402633-chr9:98431711..98434711,8	K562	blood:
10	chr3:73160048..73161620-chr9:98433191..98434691,2	K562	blood:
11	chr11:62607631..62609200-chr9:98431711..98434711,4	K562	blood:
12	chr11:62608622..62609147-chr9:98433191..98433711,2	Hela-S3	cervix:
13	chr11:62608635..62609155-chr9:98433191..98433711,4	HCT-116	colon:

No data

No data

No data

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction
ENSG00000236383	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000188825	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs71499911	0.88[AMR][1000 genomes]
rs817171	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98428200-98433600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:98429200-98433200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:98432000-98435600	Weak transcription	Ovary	ovary
4	chr9:98432600-98433400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:98432800-98433200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:98432800-98436400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:98433000-98433400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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