Variant report

Variant	rs7010922
Chromosome Location	chr8:39960177-39960178
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10958600	0.82[CEU][hapmap]
rs12682158	0.90[CHB][hapmap]
rs13257096	0.82[CHB][hapmap]
rs1471558	0.84[EUR][1000 genomes]
rs1471559	0.82[CEU][hapmap]
rs1471560	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs7828920	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1034355	chr8:39942179-39961432	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39951000-39968000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:39956000-39963800	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:39957000-39962200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:39957600-39961200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:39957800-39960200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:39958000-39961000	Weak transcription	Fetal Intestine Large	intestine
7	chr8:39958000-39961000	Weak transcription	Fetal Intestine Small	intestine
8	chr8:39958000-39961600	Enhancers	A549	lung
9	chr8:39958000-39970800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:39959400-39961800	Enhancers	Placenta	Placenta
11	chr8:39959600-39960800	Weak transcription	Stomach Mucosa	stomach
12	chr8:39959600-39960800	Weak transcription	HepG2	liver
13	chr8:39959600-39961600	Weak transcription	Hela-S3	cervix
14	chr8:39959600-39964000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:39959600-39965800	Weak transcription	HUVEC	blood vessel
16	chr8:39959600-39976400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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