Variant report

Variant	rs7011056
Chromosome Location	chr8:54326694-54326695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10088209	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10099752	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10156237	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10156306	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10958359	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10958360	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10958361	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11777689	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11777695	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11783286	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11786851	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12549689	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12674505	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12679994	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12680744	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12681500	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12708148	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13249941	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13251393	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13251771	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13251777	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13260314	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13267842	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13269849	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13271936	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1382127	0.95[EUR][1000 genomes]
rs1477967	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1477979	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4873738	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6473831	0.87[EUR][1000 genomes]
rs6473832	0.87[EUR][1000 genomes]
rs6473833	0.84[EUR][1000 genomes]
rs6473834	0.82[EUR][1000 genomes]
rs6473835	0.82[EUR][1000 genomes]
rs6473836	0.82[EUR][1000 genomes]
rs6473837	0.81[EUR][1000 genomes]
rs6988606	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6990690	0.87[EUR][1000 genomes]
rs6991041	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6991389	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6991684	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6994601	0.82[EUR][1000 genomes]
rs7357522	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs922395	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9886570	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54304800-54332200	Weak transcription	Left Ventricle	heart
2	chr8:54318400-54336400	Weak transcription	Ovary	ovary
3	chr8:54321600-54336400	Weak transcription	Right Ventricle	heart
4	chr8:54324400-54336200	Weak transcription	Aorta	Aorta
5	chr8:54325400-54326800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:54325600-54327000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:54325600-54327000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:54326000-54327000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:54326400-54326800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:54326600-54327000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr8:54326600-54327200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr8:54326600-54327200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:54326600-54327200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links