Variant report

Variant	rs701293
Chromosome Location	chr7:83544140-83544141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1404474	0.90[AFR][1000 genomes]
rs1404475	0.87[LWK][hapmap];0.89[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs1468651	0.91[AFR][1000 genomes]
rs1468652	0.93[YRI][hapmap];0.93[AFR][1000 genomes]
rs1468653	0.93[AFR][1000 genomes]
rs2888206	0.82[LWK][hapmap];0.83[MKK][hapmap]
rs696871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs701294	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs701295	0.82[EUR][1000 genomes]
rs701296	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs701302	0.93[EUR][1000 genomes]
rs701303	0.92[EUR][1000 genomes]
rs7459373	0.89[ASW][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs797634	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888619	chr7:83452312-83549032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888621	chr7:83526743-83566026	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv888622	chr7:83526743-83631376	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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