Variant report

Variant	rs7014010
Chromosome Location	chr8:68624443-68624444
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12115004	1.00[MEX][hapmap]
rs1812678	1.00[MEX][hapmap]
rs6472318	1.00[MEX][hapmap]
rs7003223	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv530518	chr8:68521420-68973114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68605600-68631400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:68617400-68625800	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:68622000-68628800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:68622800-68625000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:68622800-68625000	Enhancers	HMEC	breast
6	chr8:68622800-68625800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:68622800-68626600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:68623000-68624800	Enhancers	NHEK	skin
9	chr8:68623000-68625200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:68623200-68625200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:68623200-68625800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:68623200-68627400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:68623400-68625800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:68623600-68627200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:68623600-68629000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:68623600-68631200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:68623800-68626800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:68623800-68628800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:68623800-68629000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:68624000-68626800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:68624000-68628600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:68624200-68624800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:68624200-68625800	Enhancers	NHDF-Ad	bronchial
24	chr8:68624400-68624600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:68624400-68628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:68624400-68631000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links