Variant report

Variant	rs7014033
Chromosome Location	chr8:61428441-61428442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:61428362-61428487	K562	blood:	n/a	n/a
2	EP300	chr8:61428258-61428520	K562	blood:	n/a	n/a
3	POLR2A	chr8:61428323-61430981	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:61428381..61431496-chr8:61588452..61591900,3	K562	blood:
2	chr8:61419134..61423375-chr8:61426566..61429459,5	K562	blood:
3	chr8:61419831..61423917-chr8:61427877..61431057,5	MCF-7	breast:
4	chr8:61418332..61424473-chr8:61425755..61430943,9	K562	blood:
5	chr8:61324950..61327634-chr8:61427769..61429933,3	MCF-7	breast:

No data

Variant related genes	Relation type
RAB2A	TF binding region
ENSG00000251396	Chromatin interaction
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7003660	0.85[AMR][1000 genomes]
rs73259460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259475	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815886	1.00[MEX][hapmap]
rs7831316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834982	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv3398933	chr8:61428423-61431271	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61413000-61428800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:61413000-61428800	Weak transcription	Esophagus	oesophagus
3	chr8:61425000-61428600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:61426200-61428600	Enhancers	Placenta	Placenta
5	chr8:61427000-61428800	Weak transcription	Fetal Intestine Large	intestine
6	chr8:61427200-61428800	Weak transcription	Pancreas	Pancrea
7	chr8:61427600-61428600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:61427600-61428600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr8:61428000-61428600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:61428000-61428600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:61428000-61428800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:61428200-61428600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:61428200-61428600	Enhancers	Hela-S3	cervix
14	chr8:61428200-61428600	Enhancers	HepG2	liver
15	chr8:61428200-61428800	Enhancers	Dnd41	blood
16	chr8:61428200-61429000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:61428200-61429600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:61428200-61430800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:61428400-61428600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:61428400-61428600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:61428400-61428600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr8:61428400-61428600	Enhancers	Fetal Muscle Trunk	muscle
23	chr8:61428400-61428600	Flanking Active TSS	K562	blood
24	chr8:61428400-61428600	Enhancers	NH-A	brain
25	chr8:61428400-61428800	Enhancers	Duodenum Mucosa	Duodenum
26	chr8:61428400-61428800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr8:61428400-61428800	Enhancers	Stomach Smooth Muscle	stomach
28	chr8:61428400-61429000	Flanking Active TSS	Osteobl	bone
29	chr8:61428400-61429200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:61428400-61430800	Active TSS	Adipose Nuclei	Adipose
31	chr8:61428400-61430800	Active TSS	HMEC	breast
32	chr8:61428400-61430800	Active TSS	NHEK	skin
33	chr8:61428400-61431400	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr8:61428400-61431400	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr8:61428400-61431400	Active TSS	A549	lung
36	chr8:61428400-61431400	Active TSS	NHLF	lung
37	chr8:61428400-61431600	Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links