Variant report

Variant	rs7014850
Chromosome Location	chr8:8955609-8955610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8943472..8945578-chr8:8953667..8955933,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11776300	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11782937	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13248595	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13256068	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13264785	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1445494	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1445495	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17155242	0.80[ASN][1000 genomes]
rs1809006	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2898208	0.96[ASN][1000 genomes]
rs4840392	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4840393	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4841098	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4841099	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4841100	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4841101	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4841102	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56106119	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601289	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7465439	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9650629	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv523098	chr8:8944307-8982396	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv526092	chr8:8944307-8982396	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1022328	chr8:8954003-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8935400-8959600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:8952200-8957800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:8952200-8958400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:8953200-8958800	Weak transcription	Fetal Lung	lung
5	chr8:8954000-8956600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:8954000-8957200	Weak transcription	Fetal Heart	heart
7	chr8:8954000-8959400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:8954000-8959600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:8954200-8957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:8954200-8959200	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:8954200-8960400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:8954200-8960800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:8954400-8957200	Weak transcription	Fetal Intestine Small	intestine
14	chr8:8954400-8959600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:8954600-8956800	Weak transcription	Fetal Intestine Large	intestine
16	chr8:8954600-8957000	Weak transcription	Stomach Mucosa	stomach
17	chr8:8954600-8959000	Weak transcription	Liver	Liver
18	chr8:8954600-8961800	Weak transcription	Lung	lung
19	chr8:8955200-8959400	Weak transcription	Pancreas	Pancrea
20	chr8:8955200-8962000	Weak transcription	Gastric	stomach

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