Variant report

Variant	rs7016402
Chromosome Location	chr8:131019619-131019620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr8:131019555-131019655	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:131018416..131020834-chr8:131027208..131028989,2	MCF-7	breast:
2	chr8:131019270..131022496-chr8:131027575..131029857,4	MCF-7	breast:
3	chr8:131011363..131013823-chr8:131017566..131020563,3	MCF-7	breast:

Variant related genes	Relation type
RNU7-181P	TF binding region
ENSG00000153310	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1349847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194770	1.00[AFR][1000 genomes]
rs28520393	1.00[ASN][1000 genomes]
rs55878330	1.00[ASN][1000 genomes]
rs66523355	1.00[ASN][1000 genomes]
rs72718400	1.00[AFR][1000 genomes]
rs72720304	1.00[AFR][1000 genomes]
rs72720325	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72720337	1.00[ASN][1000 genomes]
rs72720345	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720360	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720361	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720362	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720365	1.00[ASN][1000 genomes]
rs7817091	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1021229	chr8:130887132-131057897	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1017292	chr8:130887132-131107258	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv465808	chr8:130963259-131118658	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv612232	chr8:130963259-131118658	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv465809	chr8:131005345-131031827	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv612233	chr8:131005345-131031827	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131008400-131020600	Weak transcription	Psoas Muscle	Psoas
2	chr8:131009000-131021800	Weak transcription	Colonic Mucosa	Colon
3	chr8:131009400-131026200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:131010000-131020200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:131010000-131026800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:131010000-131027000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:131010000-131027000	Weak transcription	Small Intestine	intestine
8	chr8:131010200-131022600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:131010400-131020000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:131010600-131020600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:131010800-131020400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:131011000-131027600	Weak transcription	Stomach Mucosa	stomach
13	chr8:131011600-131026800	Weak transcription	Brain Germinal Matrix	brain
14	chr8:131011800-131019800	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:131011800-131020800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:131012200-131026000	Weak transcription	Fetal Brain Female	brain
17	chr8:131012400-131020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:131012400-131021000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:131012400-131024600	Weak transcription	Left Ventricle	heart
20	chr8:131012400-131027000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:131012400-131027000	Weak transcription	Esophagus	oesophagus
22	chr8:131012600-131020600	Weak transcription	Brain Anterior Caudate	brain
23	chr8:131012600-131020600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:131012600-131020600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:131012600-131020800	Weak transcription	Right Atrium	heart
26	chr8:131012600-131020800	Weak transcription	HSMM	muscle
27	chr8:131012600-131021000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:131012600-131021000	Weak transcription	HSMMtube	muscle
29	chr8:131012600-131021200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:131012600-131022200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:131012600-131022400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:131012600-131024800	Weak transcription	Fetal Heart	heart
33	chr8:131012600-131027200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr8:131012600-131027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:131012600-131027800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr8:131012800-131020800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:131012800-131021000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:131012800-131022000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:131012800-131026800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr8:131012800-131026800	Weak transcription	NH-A	brain
41	chr8:131013200-131020400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:131013400-131026000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:131013600-131021000	Weak transcription	Lung	lung
44	chr8:131013800-131020800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:131015000-131020800	Weak transcription	Adipose Nuclei	Adipose
46	chr8:131015000-131023400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
47	chr8:131016000-131020800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:131016000-131021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr8:131016000-131021200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:131016000-131021200	Weak transcription	K562	blood

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