Variant report

Variant	rs7017055
Chromosome Location	chr8:52530756-52530757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13266611	0.87[AMR][1000 genomes]
rs2976211	0.87[AMR][1000 genomes]
rs4242468	1.00[AMR][1000 genomes]
rs4256584	0.87[AMR][1000 genomes]
rs4873581	0.87[AMR][1000 genomes]
rs57463910	0.84[AFR][1000 genomes]
rs60640945	0.87[AMR][1000 genomes]
rs61136207	0.82[AFR][1000 genomes]
rs6984491	0.87[AMR][1000 genomes]
rs6995793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73572372	0.87[AMR][1000 genomes]
rs73574283	0.87[AMR][1000 genomes]
rs73580249	0.87[AMR][1000 genomes]
rs7817291	0.87[AMR][1000 genomes]
rs7831731	1.00[AMR][1000 genomes]
rs7832319	0.87[AMR][1000 genomes]
rs7841882	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv831313	chr8:52458835-52638968	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52524600-52535400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:52529600-52532800	Weak transcription	Aorta	Aorta
3	chr8:52529800-52531200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:52529800-52532000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:52530000-52530800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr8:52530000-52531200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:52530000-52531200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:52530000-52531200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:52530000-52531400	Enhancers	Hela-S3	cervix
10	chr8:52530000-52531800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:52530000-52532200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:52530000-52532200	Enhancers	Fetal Intestine Small	intestine
13	chr8:52530200-52530800	Enhancers	Fetal Intestine Large	intestine
14	chr8:52530400-52530800	Enhancers	Brain Hippocampus Middle	brain
15	chr8:52530400-52530800	Enhancers	Fetal Brain Male	brain
16	chr8:52530400-52530800	Enhancers	Fetal Muscle Trunk	muscle
17	chr8:52530400-52530800	Enhancers	Right Atrium	heart
18	chr8:52530400-52531000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:52530400-52531000	Flanking Active TSS	GM12878-XiMat	blood
20	chr8:52530400-52531400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr8:52530400-52531400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:52530400-52531400	Enhancers	Fetal Muscle Leg	muscle
23	chr8:52530400-52531800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr8:52530400-52536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr8:52530600-52531000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:52530600-52531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:52530600-52531200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:52530600-52531200	Enhancers	Left Ventricle	heart
29	chr8:52530600-52531400	Enhancers	Right Ventricle	heart
30	chr8:52530600-52532800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:52530600-52533600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links