Variant report

Variant	rs7017151
Chromosome Location	chr8:121021672-121021673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10755922	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1519811	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1519815	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1519816	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2001252	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2326427	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4364674	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4501620	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56035307	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56170125	0.95[EUR][1000 genomes]
rs56833210	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58821811	0.97[EUR][1000 genomes]
rs59029393	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59096952	0.97[EUR][1000 genomes]
rs59296264	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60108234	0.97[EUR][1000 genomes]
rs6469881	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6469884	0.87[EUR][1000 genomes]
rs6469885	0.95[EUR][1000 genomes]
rs6469886	0.95[EUR][1000 genomes]
rs6469887	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6469892	0.95[AMR][1000 genomes]
rs6982861	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6986597	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6990994	0.95[EUR][1000 genomes]
rs7000361	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7000819	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7017647	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73705874	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73705875	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73705877	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7816108	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7817365	0.95[AMR][1000 genomes]
rs7818635	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7820945	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7835784	0.95[AMR][1000 genomes]
rs7835799	0.95[AMR][1000 genomes]
rs7836028	0.81[AMR][1000 genomes]
rs7836569	0.86[EUR][1000 genomes]
rs7837374	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7845888	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv891419	chr8:120990455-121047798	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv528628	chr8:121019737-121023967	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120995600-121038400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:121004000-121048000	Weak transcription	Stomach Mucosa	stomach
3	chr8:121004600-121041400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:121005200-121045800	Weak transcription	Psoas Muscle	Psoas
5	chr8:121012200-121022200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:121013200-121029600	Weak transcription	Right Ventricle	heart
7	chr8:121013800-121024200	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:121015200-121022400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:121015200-121023400	Weak transcription	Aorta	Aorta
10	chr8:121015400-121031600	Weak transcription	Fetal Lung	lung
11	chr8:121015600-121029200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:121016000-121023200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:121016000-121025600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:121016000-121031800	Weak transcription	Pancreas	Pancrea
15	chr8:121017000-121067000	Weak transcription	Brain Anterior Caudate	brain
16	chr8:121017200-121029600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:121017800-121022400	Strong transcription	Brain Hippocampus Middle	brain
18	chr8:121017800-121042000	Weak transcription	Fetal Kidney	kidney
19	chr8:121018200-121021800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:121018200-121023200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:121018200-121031000	Weak transcription	Spleen	Spleen
22	chr8:121018800-121023800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr8:121019000-121042000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:121019800-121027400	Weak transcription	Fetal Stomach	stomach
25	chr8:121020000-121022000	Weak transcription	Fetal Intestine Large	intestine
26	chr8:121020000-121023400	Weak transcription	Ovary	ovary
27	chr8:121020000-121025200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:121020000-121030800	Weak transcription	Gastric	stomach
29	chr8:121020000-121044800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:121020000-121046000	Weak transcription	Esophagus	oesophagus
31	chr8:121020200-121021800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:121020200-121022200	Enhancers	Primary hematopoietic stem cells	blood
33	chr8:121020200-121025800	Weak transcription	Liver	Liver
34	chr8:121020200-121027400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr8:121020400-121021800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr8:121020400-121022000	Bivalent Enhancer	Dnd41	blood
37	chr8:121020800-121022000	Strong transcription	Brain Substantia Nigra	brain
38	chr8:121020800-121022400	Strong transcription	Left Ventricle	heart
39	chr8:121021000-121022000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:121021200-121022000	Strong transcription	Colon Smooth Muscle	Colon
41	chr8:121021200-121022200	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr8:121021400-121022200	Enhancers	Primary T cells from cord blood	blood
43	chr8:121021400-121022600	Weak transcription	Placenta	Placenta
44	chr8:121021400-121027600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr8:121021600-121021800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:121021600-121023200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:121021600-121023400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr8:121021600-121025800	Weak transcription	Fetal Intestine Small	intestine
49	chr8:121021600-121027200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:121021600-121029600	Weak transcription	Fetal Muscle Leg	muscle

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