Variant report

Variant	rs701822
Chromosome Location	chr10:99038933-99038934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99030229..99033115-chr10:99036634..99039427,3	K562	blood:
2	chr10:99036931..99039171-chr10:99085750..99087329,2	K562	blood:
3	chr10:99031855..99035094-chr10:99036519..99039061,3	K562	blood:
4	chr10:99037958..99038944-chr10:99092338..99093941,8	MCF-7	breast:
5	chr10:99036915..99039794-chr10:99077195..99080138,2	MCF-7	breast:
6	chr10:99037600..99039792-chr10:99078754..99080411,2	K562	blood:

Variant related genes	Relation type
ENSG00000231398	Chromatin interaction
ENSG00000165879	Chromatin interaction
ENSG00000213390	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10748695	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748696	0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs11189082	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253381	0.87[AFR][1000 genomes]
rs1253382	0.87[AFR][1000 genomes]
rs1253383	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253388	1.00[YRI][hapmap]
rs1253391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1253392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs1253393	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];0.96[YRI][hapmap]
rs1253395	0.85[AFR][1000 genomes]
rs1253398	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253399	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253402	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1253403	0.96[YRI][hapmap]
rs1253406	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs2244070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247283	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2250134	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2253301	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2297990	0.85[MEX][hapmap]
rs2487269	0.86[AFR][1000 genomes]
rs2487274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2516326	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3740513	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4418736	0.85[MEX][hapmap]
rs4917764	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919088	0.85[MEX][hapmap]
rs701818	0.96[YRI][hapmap]
rs701820	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs7075761	0.94[ASN][1000 genomes]
rs72835323	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72835333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895498	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7905604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7923275	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793514	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs793523	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs793526	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs793528	1.00[YRI][hapmap]
rs793529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs812089	0.87[AFR][1000 genomes]
rs928711	0.88[AFR][1000 genomes]
rs964733	0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1041614	chr10:98928281-99083056	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	esv1797410	chr10:98983785-99041740	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1040903	chr10:98986382-99047475	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv7507	chr10:99031233-99070690	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98978600-99051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:98987200-99051200	Weak transcription	Pancreas	Pancrea
3	chr10:98994600-99039000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:99005200-99046800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:99019400-99050000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:99019400-99051600	Weak transcription	Ovary	ovary
7	chr10:99021400-99051000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:99023600-99051200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:99024000-99046800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:99024000-99050800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:99024400-99050000	Weak transcription	Spleen	Spleen
12	chr10:99024800-99051200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:99025800-99039200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:99025800-99039200	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:99025800-99050800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:99026000-99051200	Weak transcription	Primary T cells from cord blood	blood
17	chr10:99027600-99046200	Weak transcription	Thymus	Thymus
18	chr10:99027800-99045600	Weak transcription	Fetal Thymus	thymus
19	chr10:99028600-99051200	Weak transcription	Small Intestine	intestine
20	chr10:99028800-99046800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:99031400-99050400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:99034800-99039200	Weak transcription	Psoas Muscle	Psoas
23	chr10:99034800-99046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:99037200-99039600	Enhancers	Primary hematopoietic stem cells	blood
25	chr10:99037200-99040000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:99037400-99039000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:99037400-99039000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr10:99037400-99039000	Enhancers	Colon Smooth Muscle	Colon
29	chr10:99037400-99039200	Enhancers	Hela-S3	cervix
30	chr10:99037400-99039400	Enhancers	Liver	Liver
31	chr10:99037400-99039400	Enhancers	Fetal Heart	heart
32	chr10:99037400-99039400	Enhancers	HSMM	muscle
33	chr10:99037400-99039400	Enhancers	HSMMtube	muscle
34	chr10:99037400-99039600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:99037400-99039600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:99037400-99039600	Enhancers	Dnd41	blood
37	chr10:99037400-99039800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:99037400-99039800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:99037400-99039800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:99037400-99039800	Enhancers	NHDF-Ad	bronchial
41	chr10:99037400-99039800	Enhancers	Osteobl	bone
42	chr10:99037400-99040000	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr10:99037400-99040000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr10:99037600-99039000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr10:99037600-99039400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:99037600-99039400	Enhancers	Adipose Nuclei	Adipose
47	chr10:99037600-99039400	Enhancers	NHLF	lung
48	chr10:99037600-99039600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr10:99037600-99039800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:99037800-99041400	Enhancers	Fetal Intestine Small	intestine

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