Variant report

Variant	rs7019033
Chromosome Location	chr9:100793176-100793177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100789228..100794108-chr9:100794751..100799924,8	K562	blood:
2	chr9:100745634..100748414-chr9:100792592..100795011,2	MCF-7	breast:
3	chr9:100781552..100783540-chr9:100791010..100793557,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12001675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12554172	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3739672	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4742711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743150	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743151	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6478522	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7041878	0.86[ASN][1000 genomes]
rs7850685	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7855432	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs874610	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs957955	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100781800-100796800	Weak transcription	Brain Anterior Caudate	brain
2	chr9:100781800-100796800	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:100782000-100796800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr9:100782200-100794200	Weak transcription	NHDF-Ad	bronchial
5	chr9:100782200-100796800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:100782200-100796800	Weak transcription	HepG2	liver
7	chr9:100782400-100796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:100782400-100797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:100783600-100796800	Weak transcription	Liver	Liver
10	chr9:100783600-100796800	Weak transcription	A549	lung
11	chr9:100783600-100797000	Weak transcription	Brain Substantia Nigra	brain
12	chr9:100783800-100797000	Weak transcription	NHEK	skin
13	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:100784200-100794800	Weak transcription	GM12878-XiMat	blood
15	chr9:100784200-100796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:100784200-100796800	Weak transcription	Gastric	stomach
17	chr9:100784200-100796800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:100784200-100796800	Weak transcription	Dnd41	blood
19	chr9:100784200-100796800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr9:100784200-100797000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr9:100784400-100794200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:100784400-100794200	Weak transcription	HSMM	muscle
23	chr9:100784400-100796000	Weak transcription	Fetal Thymus	thymus
24	chr9:100784400-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:100784400-100796800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:100784400-100796800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:100784400-100797400	Weak transcription	HSMMtube	muscle
30	chr9:100784600-100795600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:100784600-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:100784600-100796800	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:100784800-100796800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:100785000-100797000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:100785000-100801400	Weak transcription	Fetal Intestine Small	intestine
36	chr9:100785200-100797400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:100785600-100797000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:100787600-100794000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:100789000-100796800	Weak transcription	Pancreas	Pancrea
40	chr9:100789200-100797000	Weak transcription	Thymus	Thymus
41	chr9:100793000-100796600	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links