Variant report

Variant	rs701911
Chromosome Location	chr1:211905584-211905585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211898023..211900706-chr1:211903534..211907505,4	K562	blood:

Variant related genes	Relation type
ENSG00000226868	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1773359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs701913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9651110	0.80[YRI][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs701911	RD3	cis	cerebellum	SCAN
rs701911	SLC30A1	cis	parietal	SCAN
rs701911	LPGAT1	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211896400-211909000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211898800-211906800	Weak transcription	Pancreas	Pancrea
4	chr1:211900200-211908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:211903800-211906400	Enhancers	Brain Hippocampus Middle	brain
6	chr1:211903800-211908600	Weak transcription	Lung	lung
7	chr1:211904400-211906400	Enhancers	Brain Anterior Caudate	brain
8	chr1:211904600-211906000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:211904600-211906400	Enhancers	Brain Angular Gyrus	brain
10	chr1:211904600-211906400	Enhancers	Brain Cingulate Gyrus	brain
11	chr1:211904600-211912600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:211904600-211913800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:211904800-211906000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:211904800-211906200	Enhancers	A549	lung
15	chr1:211904800-211913400	Enhancers	Brain Substantia Nigra	brain
16	chr1:211905000-211905600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:211905000-211905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:211905000-211906200	Enhancers	GM12878-XiMat	blood
19	chr1:211905000-211908400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:211905200-211905600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:211905200-211905600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:211905200-211907800	Weak transcription	Hela-S3	cervix
23	chr1:211905400-211905800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:211905400-211907600	Weak transcription	K562	blood
25	chr1:211905400-211908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:211905400-211910600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr1:211905400-211910800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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