Variant report

Variant	rs7019299
Chromosome Location	chr9:16635017-16635018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1003069	0.88[YRI][hapmap]
rs1029015	0.85[CHB][hapmap]
rs10756757	0.89[CEU][hapmap]
rs10756762	0.81[CEU][hapmap]
rs10756773	0.90[CHB][hapmap]
rs10810579	1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap];0.86[ASN][1000 genomes]
rs10810580	0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs10962519	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs10962520	0.93[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs11790341	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13290470	0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1415471	0.84[CHB][hapmap]
rs1890074	0.95[CHB][hapmap]
rs2050617	1.00[CHB][hapmap]
rs2275256	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4961727	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs4961728	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7023752	0.87[CEU][hapmap]
rs7033512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7034582	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7043298	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7046245	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943737	0.89[CEU][hapmap]
rs943738	0.89[CEU][hapmap]
rs9886876	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16627000-16636600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:16627200-16637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:16629000-16635200	Weak transcription	Fetal Lung	lung
4	chr9:16629000-16640600	Weak transcription	HSMMtube	muscle
5	chr9:16629200-16637200	Weak transcription	Fetal Stomach	stomach
6	chr9:16629200-16642200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:16629400-16640400	Weak transcription	HSMM	muscle
8	chr9:16629600-16635800	Weak transcription	Ovary	ovary
9	chr9:16629600-16635800	Weak transcription	NHDF-Ad	bronchial
10	chr9:16629600-16637400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:16629600-16638000	Weak transcription	Osteobl	bone
12	chr9:16629600-16653600	Weak transcription	HUVEC	blood vessel
13	chr9:16630000-16636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:16630000-16639600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:16630000-16642400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:16630200-16635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:16630400-16637400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:16630400-16640600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:16632000-16637000	Weak transcription	NHEK	skin
20	chr9:16632800-16635800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:16634000-16636200	Enhancers	NHLF	lung
22	chr9:16634000-16638200	Enhancers	Colon Smooth Muscle	Colon
23	chr9:16634400-16637200	Weak transcription	Rectal Smooth Muscle	rectum

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