Variant report

Variant	rs7020257
Chromosome Location	chr9:97400668-97400669
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96927010..96929542-chr9:97400485..97402088,2	MCF-7	breast:
2	chr9:97315630..97317501-chr9:97398483..97401293,2	MCF-7	breast:
3	chr9:97399286..97401961-chr9:97487355..97490023,2	MCF-7	breast:
4	chr9:97398090..97401026-chr9:97919610..97921770,2	MCF-7	breast:
5	chr9:97399443..97401665-chr9:97771079..97774076,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction
ENSG00000269946	Chromatin interaction
ENSG00000231806	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28369668	1.00[AFR][1000 genomes]
rs28369692	1.00[AFR][1000 genomes]
rs28402383	0.83[AFR][1000 genomes]
rs28402385	1.00[AFR][1000 genomes]
rs28402388	1.00[AFR][1000 genomes]
rs28402412	1.00[AFR][1000 genomes]
rs4526415	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
3	chr9:97394200-97400800	Weak transcription	Adipose Nuclei	Adipose
4	chr9:97395200-97401000	Weak transcription	Colonic Mucosa	Colon
5	chr9:97395800-97400800	Weak transcription	Gastric	stomach
6	chr9:97400200-97402200	Active TSS	Liver	Liver
7	chr9:97400400-97400800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
8	chr9:97400400-97400800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:97400400-97400800	Weak transcription	Lung	lung
10	chr9:97400400-97401000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:97400400-97401000	Bivalent/Poised TSS	Fetal Stomach	stomach
12	chr9:97400400-97401600	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr9:97400400-97401800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr9:97400400-97402000	Active TSS	Stomach Mucosa	stomach
15	chr9:97400600-97400800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:97400600-97400800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
17	chr9:97400600-97400800	Bivalent Enhancer	Primary B cells from cord blood	blood
18	chr9:97400600-97400800	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr9:97400600-97400800	Enhancers	Right Ventricle	heart
20	chr9:97400600-97401000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr9:97400600-97401000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr9:97400600-97401000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr9:97400600-97401000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:97400600-97401000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr9:97400600-97401000	Enhancers	Primary hematopoietic stem cells	blood
26	chr9:97400600-97401000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr9:97400600-97401000	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:97400600-97401000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr9:97400600-97401000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:97400600-97401000	Enhancers	Small Intestine	intestine
31	chr9:97400600-97401200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:97400600-97401200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:97400600-97401200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:97400600-97401400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:97400600-97401400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
36	chr9:97400600-97401400	Flanking Active TSS	Pancreas	Pancrea
37	chr9:97400600-97401600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr9:97400600-97401600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
39	chr9:97400600-97401600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
40	chr9:97400600-97402200	Bivalent/Poised TSS	Fetal Kidney	kidney
41	chr9:97400600-97402200	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr9:97400600-97402400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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