Variant report

Variant	rs7020524
Chromosome Location	chr9:13514410-13514411
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10961099	0.86[ASN][1000 genomes]
rs7020951	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7021061	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7024736	0.88[ASN][1000 genomes]
rs7872699	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:13511200-13522200	Weak transcription	Psoas Muscle	Psoas
3	chr9:13511800-13515000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:13512600-13514600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:13513000-13514600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:13513000-13514600	Enhancers	HMEC	breast
7	chr9:13513200-13514600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:13513200-13514600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:13513400-13514600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:13513400-13514600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:13513600-13514600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:13513600-13515000	Enhancers	Fetal Muscle Trunk	muscle
13	chr9:13514200-13520000	Weak transcription	HUVEC	blood vessel
14	chr9:13514400-13515200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:13514400-13515200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:13514400-13515200	Enhancers	NHEK	skin
17	chr9:13514400-13517600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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