Variant report

Variant	rs7021867
Chromosome Location	chr9:92685454-92685455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92206823..92209475-chr9:92684160..92686501,2	MCF-7	breast:
2	chr9:92218872..92221885-chr9:92684149..92688442,4	MCF-7	breast:
3	chr9:92217841..92222641-chr9:92679830..92688712,19	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10120057	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1036700	0.86[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10761340	0.95[CHB][hapmap]
rs10821092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992771	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10993647	0.86[AFR][1000 genomes]
rs12235508	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12235763	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs16905869	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4743952	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744365	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7021720	0.83[ASW][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.86[LWK][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3399737	chr9:92682932-92687130	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92680000-92685600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:92681600-92691600	Weak transcription	Right Atrium	heart
3	chr9:92681800-92686000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:92681800-92686200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:92681800-92686200	Weak transcription	Fetal Intestine Large	intestine
6	chr9:92681800-92686200	Weak transcription	Fetal Intestine Small	intestine
7	chr9:92681800-92686200	Weak transcription	Placenta	Placenta
8	chr9:92681800-92686200	Weak transcription	Left Ventricle	heart
9	chr9:92681800-92689000	Weak transcription	Right Ventricle	heart
10	chr9:92682000-92689200	Weak transcription	Lung	lung
11	chr9:92683800-92689200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:92684400-92685600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:92684400-92687400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:92684400-92687400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr9:92685000-92685800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:92685000-92687200	Enhancers	HepG2	liver
17	chr9:92685000-92690800	Enhancers	Liver	Liver
18	chr9:92685000-92691200	Weak transcription	Spleen	Spleen
19	chr9:92685200-92686200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:92685200-92686200	Weak transcription	Fetal Heart	heart
21	chr9:92685200-92686200	Weak transcription	Fetal Kidney	kidney
22	chr9:92685200-92686200	Weak transcription	Fetal Lung	lung
23	chr9:92685200-92686200	Weak transcription	Pancreas	Pancrea
24	chr9:92685200-92689200	Weak transcription	Gastric	stomach
25	chr9:92685400-92685600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:92685400-92688600	Weak transcription	Fetal Brain Male	brain

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