Variant report

Variant	rs7023147
Chromosome Location	chr9:10077180-10077181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10116268	0.94[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs10116279	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs10119035	0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs10122248	0.91[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10511531	1.00[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs10809027	0.87[MEX][hapmap]
rs10958869	1.00[CEU][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap]
rs10958872	1.00[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap]
rs10958873	1.00[CEU][hapmap]
rs10958880	1.00[CEU][hapmap]
rs12685620	0.85[EUR][1000 genomes]
rs1631927	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1848753	0.90[CEU][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs1848754	1.00[CEU][hapmap]
rs291321	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs399585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs399780	1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs410561	0.90[ASN][1000 genomes]
rs428721	0.85[JPT][hapmap]
rs7039475	1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1021380	chr9:9943339-10126281	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv539989	chr9:9943339-10126281	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892301	chr9:9971050-10144584	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892302	chr9:9974221-10158866	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv466155	chr9:9989765-10091133	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613370	chr9:9989765-10091133	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv831506	chr9:10040172-10204609	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv892303	chr9:10054994-10099327	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv824850	chr9:10058091-10134157	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv892304	chr9:10061872-10119157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv892305	chr9:10061872-10123735	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv613371	chr9:10075721-10101169	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv613372	chr9:10077180-10102903	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv892306	chr9:10077180-10127876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs7023147	ANP32C	trans	brain	seeQTL
rs7023147	RAP1GAP2	trans	brain	seeQTL
rs7023147	SMYD1	trans	brain	seeQTL
rs7023147	LAMB2	trans	brain	seeQTL
rs7023147	CCDC102A	trans	brain	seeQTL
rs7023147	CYP21A2	trans	brain	seeQTL
rs7023147	GDF1	trans	brain	seeQTL
rs7023147	TRIM71	trans	brain	seeQTL
rs7023147	KIF6	trans	brain	seeQTL
rs7023147	GDPD2	trans	brain	seeQTL
rs7023147	OR2H2	trans	brain	seeQTL
rs7023147	TTC30A	trans	brain	seeQTL
rs7023147	WDR63	trans	brain	seeQTL
rs7023147	PGK2	trans	brain	seeQTL
rs7023147	MORN5	trans	brain	seeQTL
rs7023147	RASL11B	trans	brain	seeQTL
rs7023147	MYOZ1	trans	brain	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links