Variant report

Variant	rs7023279
Chromosome Location	chr9:100522670-100522671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10818036	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10983648	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1398230	0.88[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv972793	chr9:100521630-100525389	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7023279	NCBP1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100515200-100524200	Weak transcription	Esophagus	oesophagus
2	chr9:100519400-100523600	Enhancers	Fetal Intestine Large	intestine
3	chr9:100519800-100523600	Enhancers	Fetal Intestine Small	intestine
4	chr9:100521000-100524600	Enhancers	Adipose Nuclei	Adipose
5	chr9:100521400-100523800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:100521400-100524000	Enhancers	Liver	Liver
7	chr9:100521600-100523800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:100521800-100522800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:100521800-100522800	Enhancers	A549	lung
10	chr9:100521800-100522800	Flanking Active TSS	HepG2	liver
11	chr9:100522000-100522800	Enhancers	Small Intestine	intestine
12	chr9:100522000-100523600	Enhancers	Duodenum Mucosa	Duodenum
13	chr9:100522400-100526200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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