Variant report

Variant	rs7023431
Chromosome Location	chr9:110453996-110453997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10759253	0.81[EUR][1000 genomes]
rs10759254	0.83[EUR][1000 genomes]
rs10816556	0.83[EUR][1000 genomes]
rs10816557	0.83[EUR][1000 genomes]
rs10979005	0.84[EUR][1000 genomes]
rs10979006	0.84[EUR][1000 genomes]
rs7469799	0.83[EUR][1000 genomes]
rs9776703	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110452200-110456800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:110452800-110455600	Weak transcription	NHDF-Ad	bronchial
3	chr9:110453000-110454000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:110453400-110454000	Enhancers	Fetal Intestine Small	intestine
5	chr9:110453600-110454000	Enhancers	Fetal Intestine Large	intestine
6	chr9:110453600-110454200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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