Variant report

Variant	rs7024015
Chromosome Location	chr9:97790704-97790705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97678393..97680086-chr9:97790321..97791837,2	MCF-7	breast:
2	chr9:97626084..97627897-chr9:97790026..97791698,2	MCF-7	breast:
3	chr9:97785037..97786966-chr9:97789243..97791413,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12686500	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs72750368	1.00[AMR][1000 genomes]
rs72750381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
2	chr9:97773200-97793200	Weak transcription	Brain Germinal Matrix	brain
3	chr9:97777400-97794200	Weak transcription	Thymus	Thymus
4	chr9:97780600-97790800	Weak transcription	Fetal Brain Female	brain
5	chr9:97781200-97793600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:97781400-97793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:97781400-97793600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:97782000-97792800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:97782600-97793600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:97783600-97794000	Weak transcription	GM12878-XiMat	blood
11	chr9:97786200-97791800	Enhancers	Right Ventricle	heart
12	chr9:97787000-97794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:97787600-97793000	Genic enhancers	HepG2	liver
14	chr9:97787800-97792800	Weak transcription	Spleen	Spleen
15	chr9:97787800-97793800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:97787800-97795800	Genic enhancers	Osteobl	bone
17	chr9:97788000-97791200	Weak transcription	Colonic Mucosa	Colon
18	chr9:97788000-97794800	Genic enhancers	Muscle Satellite Cultured Cells	--
19	chr9:97788200-97791000	Weak transcription	Hela-S3	cervix
20	chr9:97788200-97791200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:97788200-97792800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:97788200-97793000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:97788200-97794400	Weak transcription	K562	blood
24	chr9:97788400-97791200	Weak transcription	Placenta	Placenta
25	chr9:97788400-97791200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:97788400-97795800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr9:97788600-97791200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:97788600-97791200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr9:97788800-97791200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:97788800-97792200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:97788800-97792800	Weak transcription	Adipose Nuclei	Adipose
32	chr9:97788800-97795000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr9:97788800-97795800	Enhancers	Psoas Muscle	Psoas
34	chr9:97789000-97790800	Strong transcription	Fetal Intestine Small	intestine
35	chr9:97789000-97791400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:97789000-97793000	Weak transcription	Aorta	Aorta
37	chr9:97789000-97793000	Weak transcription	HUVEC	blood vessel
38	chr9:97789000-97794200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:97789000-97794400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:97789000-97806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:97789200-97791200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:97789200-97791200	Enhancers	Liver	Liver
43	chr9:97789200-97791400	Weak transcription	Fetal Kidney	kidney
44	chr9:97789200-97791400	Weak transcription	Small Intestine	intestine
45	chr9:97789800-97791600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:97789800-97792400	Enhancers	Fetal Lung	lung
47	chr9:97789800-97792800	Enhancers	Brain Substantia Nigra	brain
48	chr9:97789800-97792800	Enhancers	Fetal Heart	heart
49	chr9:97790000-97792000	Genic enhancers	NHEK	skin
50	chr9:97790000-97792200	Transcr. at gene 5' and 3'	A549	lung

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